Ecom Store Pro

How do you mark an order as paid on Shopify?

Published ·
At a glance
Short answer
Click Collect payment, then Mark as paid, once the money reached you outside Shopify; nothing is charged, and we found no documented undo.
Draft orders
Collect payment > Mark as paid, then Create order turns the draft into an order
Money
Not captured again; no third-party transaction fee on drafts marked paid or manual payment methods
No Mark as paid?
Might be missing on Payment pending orders not paid by credit card; not yet supported on subscription drafts
Way back
Delete manual-payment orders or orders from drafts marked paid once archived or canceled; an admin refund can't be reversed

How do you mark an order or a draft order as paid?

Use it when the customer paid outside Shopify, by bank deposit or cash on delivery, or when you import a past order from another platform.

Sent an invoice? Wait for the money
Marking a draft paid before payment arrives breaks the link in an invoice you already sent.

On an order:

  1. Go to Orders and open the order.
  2. In the Payment pending section, click Collect payment.
  3. Choose Mark as paid.
In Shopify adminOpen in your store
  1. Orders
  2. Order details
Order step 2 opens the Collect payment menu in the Payment pending section; Mark as paid sits in it.

On a draft order:

  1. Go to Orders > Drafts and open the draft.
  2. Click Collect payment, then Mark as paid.
  3. Click Create order.
In Shopify adminOpen in your store
  1. Orders
  2. Drafts
Draft step 3: the Mark as paid dialog ends with Create order, which turns the draft into an order.

What changes when you mark an order as paid?

No money moves: your payment provider doesn't capture the amount again.

  • The payment status becomes Paid.
  • The customer gets an order confirmation email; from a draft, only if it has their email or phone number.
  • No third-party transaction fee applies to draft orders marked as paid or to manual payment methods.
In Shopify adminOpen in your store
  1. Orders
  2. Order details
After Mark as paid, the order shows a Paid badge and section, and Refund appears among the top actions.

When is Mark as paid missing, and can you undo it?

None of the help pages we read on November 10, 2026 (payments, draft orders, refunds, cancellations) describes unmarking an order or a separate refund step for a manual payment, and an admin refund can't be reversed.

The nearest way back is removal: an order that started as a draft and was marked as paid, or one paid with a manual payment method, can be deleted once archived or canceled, and then leaves your reports. Orders paid with a gift card can be archived, but not deleted.

Related questions

Orders & customers
Can you charge a customer's saved card on Shopify?

Yes: B2B customers' vaulted cards on Shopify Payments, plus the stored card on pre-order or try-before-you-buy balances and subscription billing.

October 20, 2026

Orders & customers
What can you do about an outstanding balance on a Shopify order?

Collect it with an invoice, mark it as paid if the money arrived outside Shopify, or waive it — waiving is early access for certain stores.

October 30, 2026

Payments & payouts
Can a Shopify store accept HSA or FSA cards?

Yes, if approved: US medical sellers can ask Shopify Support about Shopify Payments or Shop Pay early access; apps are another route.

Updated November 5, 2026

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