Ecom Store Pro

How much does PCI compliance cost for an online store, and what does Shopify cover?

Published ·
At a glance
Short answer
Vendors estimate $300–$10,000 a year for a small store; Shopify's Level 1 certification covers your store, not the SAQ or scans your acquirer wants.
PCI SSC
No page we read prices a merchant's SAQ, scan or audit; its fee schedule prices assessor, vendor and training programs.
Level 1 merchants
Over 6 million Visa transactions a year, or a global merchant Visa names Level 1: a ROC, not an SAQ.
Who decides
Typically your acquirer or the card brands, which receive the SAQ, decide which one applies, if any.
ASV scans
Part of SAQ A under PCI DSS v4.x, even with processing fully outsourced.
Shopify Payments
No separate PCI fee on the Shopify pages we read.

What do vendors estimate PCI compliance costs?

No PCI SSC page we read on October 19, 2026 prices a merchant's SAQ, scan or audit; its fee schedule prices assessor, vendor and training programs. Below are estimates from Stripe, SecurityMetrics and Shopify's enterprise guide.

Vendor estimates

SourceSmall businessLarger businesses
Stripe$1,000–$10,000 a year$10,000–$50,000 a year midsize; $50,000–$250,000 a year large
SecurityMetricsAround $300 a year, up to $10,000$70,000+ a year enterprise
Shopify's enterprise guideFrom $300 a year (SAQ and scans)Over $70,000 for full PCI DSS assessments; onsite audits about $40,000; a QSA audit averages $15,000

Vendor estimates, not PCI SSC prices; read October 19, 2026.

SecurityMetrics' low end assumes small scopes; its high end depends on your environment. Price your own scope, not an average.

What does the budget pay for?

  • The SAQ: at least $300 for smaller businesses, Stripe says; SecurityMetrics lists $50–$200.
  • ASV scans: part of SAQ A under PCI DSS v4.x even where processing is fully outsourced, PCI SSC says.
  • Training and penetration tests, per Stripe, plus consulting for midsize companies; remediation, per SecurityMetrics.
  • A ROC instead of an SAQ at Level 1, Stripe says; Visa puts you there at over 6 million Visa transactions a year, or as a global merchant Visa names Level 1.
  • A processor fee: some processors charge a small annual PCI fee, Stripe notes.

What does Shopify cover, and what stays yours?

Shopify is certified Level 1 PCI DSS compliant, and says its certification "covers your store, its shopping cart and web hosting." Stripe says hosted payment systems "can decrease audit scope and annual compliance costs considerably" but names no figure. The certification is Shopify's, not yours: Shopify's enterprise guide says even on a hosted platform "you'll still have to fill out a self-assessment questionnaire if you're a Level 2–4 merchant." Typically, your acquirer or the card brands decide which SAQ, if any.

Shopify attests its own quarterly ASV scans; our PCI guide covers who pays for your scans.

On a custom site, your payment page decides the SAQ.

Shopify Payments lists "no monthly fees, no hidden fees, and no setup fees" beyond the card rate and subscription, and no Shopify page we read on October 19, 2026 (Payments help, pricing, security, terms) names a separate PCI fee.

Related questions

Orders & customers
What fee does Shopify charge when a customer pays an invoice?

When a customer pays an invoice through Shopify Payments, you pay the card rate and no third-party fee; other gateways add a plan fee.

Updated October 19, 2026

Payments & payouts
Does Shopify take a cut or a percentage of your sales?

No percentage of your sales — you pay a monthly plan plus card processing, not a commission.

Updated September 23, 2026

Payments & payouts
Which countries can you actually sell with Shopify?

Shopify blocks a named list of countries and regions; Shopify Payments covers 41 countries and regions — everywhere else needs a third-party gateway.

Updated October 19, 2026

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